Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3263Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_3143 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (653 aa)    
Predicted Functional Partners:
Swoo_1442
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sse:Ssed_1348 putative NAD(P)H oxidoreductase.
 
 
 0.918
Swoo_1441
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_1347 glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
0.843
Swoo_0653
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_4016 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
0.823
Swoo_1602
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sse:Ssed_3082 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.725
Swoo_0035
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sse:Ssed_0032 TrkA-N domain protein.
     
 0.690
Swoo_0719
PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sse:Ssed_3841 ion transport 2 domain protein.
     
 0.690
Swoo_1846
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_4236 putative permease.
  
  
 0.648
Swoo_3951
PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sse:Ssed_3664 Na+/H+ antiporter MnhB subunit-related protein.
     
 0.645
Swoo_1845
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: spl:Spea_0257 substrate-binding region of ABC-type glycine betaine transport system.
     
 0.628
Swoo_1066
PFAM: conserved hypothetical protein; KEGG: spl:Spea_2251 conserved hypothetical protein.
   
    0.624
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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