Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3291KEGG: sse:Ssed_3171 hypothetical protein. (337 aa)    
Predicted Functional Partners:
Swoo_3292
KEGG: sse:Ssed_3172 hypothetical protein.
       0.782
Swoo_0054
KEGG: sse:Ssed_0091 hypothetical protein.
  
     0.702
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
     0.691
Swoo_3290
PFAM: protein of unknown function DUF446; KEGG: sse:Ssed_3170 hypothetical protein.
       0.660
Swoo_1710
KEGG: sse:Ssed_2935 hypothetical protein.
  
     0.645
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
  
     0.634
Swoo_2272
KEGG: spl:Spea_2053 conserved hypothetical protein.
  
     0.626
Swoo_1574
KEGG: sse:Ssed_3108 hypothetical protein.
  
     0.606
Swoo_4053
KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein.
  
     0.598
Swoo_3289
PFAM: pseudouridine synthase; KEGG: sse:Ssed_3169 pseudouridylate synthase.
       0.591
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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