STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3294PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase. (215 aa)    
Predicted Functional Partners:
Swoo_3293
KEGG: sfr:Sfri_1256 hypothetical protein.
  
    0.853
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
 
     0.799
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.772
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
 
     0.769
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.748
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.746
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.727
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.726
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.718
Swoo_2136
PFAM: protein of unknown function DUF1302; KEGG: sse:Ssed_2480 protein of unknown function DUF1302.
  
     0.702
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.