STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3302PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_3184 metallo-beta-lactamase superfamily protein. (673 aa)    
Predicted Functional Partners:
Swoo_2398
Glutathione S-transferase-like protein; KEGG: bra:BRADO0919 hypothetical protein.
 
     0.570
Swoo_2406
Hypothetical protein; KEGG: pat:Patl_3336 glutathione S-transferase.
 
     0.546
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
 
   
 0.533
Swoo_3301
PFAM: regulatory protein LysR; KEGG: sse:Ssed_3183 transcriptional regulator, LysR family.
       0.518
Swoo_4009
PFAM: transport system permease protein; KEGG: spl:Spea_3332 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
    0.467
Swoo_2397
KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family.
  
     0.456
Swoo_2408
PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
  
   
 0.431
Swoo_3211
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1465 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.413
Swoo_4006
PFAM: MotA/TolQ/ExbB proton channel; KEGG: spl:Spea_3329 MotA/TolQ/ExbB proton channel.
   
    0.412
Swoo_3303
KEGG: sse:Ssed_3185 hypothetical protein.
       0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.