STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3306TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sse:Ssed_1346 sigma 54 modulation protein/ribosomal protein S30EA. (118 aa)    
Predicted Functional Partners:
rpmA
PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.782
rpsU
PFAM: ribosomal protein S21; KEGG: sse:Ssed_1075 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.780
rpsI
PFAM: ribosomal protein S9; KEGG: sse:Ssed_0748 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.773
rpmH
PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.770
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.769
rpmC
PFAM: ribosomal protein L29; KEGG: sse:Ssed_4309 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.767
rpsP
PFAM: ribosomal protein S16; KEGG: sfr:Sfri_2920 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.766
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.766
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.765
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.765
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.