STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3307KEGG: sse:Ssed_1345 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Swoo_3309
KEGG: sse:Ssed_1343 hypothetical protein.
  
    0.965
Swoo_3308
PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_1344 PepSY-associated TM helix domain protein.
 
    0.951
Swoo_3740
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
     0.592
Swoo_1507
PFAM: PepSY-associated TM helix domain protein; KEGG: sfr:Sfri_0204 PepSY-associated TM helix domain protein.
 
    0.590
Swoo_4002
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: spl:Spea_3325 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
   
    0.552
Swoo_0909
KEGG: sse:Ssed_3511 hypothetical protein.
  
     0.448
Swoo_4004
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_3327 TonB-dependent heme/hemoglobin receptor family protein.
 
    0.434
Swoo_0587
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1820 TonB-dependent receptor.
 
    0.414
Swoo_1111
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.