STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3308PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_1344 PepSY-associated TM helix domain protein. (541 aa)    
Predicted Functional Partners:
Swoo_3307
KEGG: sse:Ssed_1345 hypothetical protein.
 
    0.951
Swoo_3309
KEGG: sse:Ssed_1343 hypothetical protein.
  
    0.830
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
 
  
 0.585
Swoo_1305
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2708 TonB-dependent receptor.
 
     0.504
Swoo_1111
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.490
Swoo_0701
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cps:CPS_2817 putative regulatory protein.
 
   
 0.466
Swoo_4354
PFAM: conserved hypothetical protein; KEGG: slo:Shew_0429 hypothetical protein.
  
     0.461
Swoo_0130
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0151 hypothetical protein.
  
     0.449
Swoo_1194
PFAM: conserved hypothetical protein; KEGG: spl:Spea_1005 conserved hypothetical protein.
  
     0.448
Swoo_0946
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2875 outer membrane protein.
 
  
 0.429
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.