STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3316KEGG: sse:Ssed_1338 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Swoo_3836
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2390 argininosuccinate synthase.
  
     0.666
Swoo_3315
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
       0.522
Swoo_4376
PFAM: glycoside hydrolase family 16; KEGG: saz:Sama_1396 glucan endo-1,3-beta-D-glucosidase.
  
     0.513
Swoo_3837
PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase.
  
     0.496
Swoo_2165
KEGG: sse:Ssed_2440 hypothetical protein.
  
     0.491
Swoo_0700
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cps:CPS_2816 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.464
Swoo_3839
KEGG: cps:CPS_0241 hypothetical protein.
  
     0.462
Swoo_0145
KEGG: sse:Ssed_0165 hypothetical protein.
  
     0.437
Swoo_3835
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.425
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.