STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3318RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_1335 RNA polymerase, sigma-24 subunit, ECF subfamily. (208 aa)    
Predicted Functional Partners:
Swoo_1238
Anti sigma-E protein, RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish [...]
  
 
 0.867
Swoo_3319
PFAM: von Willebrand factor type A; KEGG: sbm:Shew185_1105 von Willebrand factor type A.
 
   
 0.836
Swoo_3034
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_1621 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   
 0.814
Swoo_2780
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_1476 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   
 0.793
Swoo_3727
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_3504 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   
 0.776
Swoo_3317
KEGG: sse:Ssed_1336 hypothetical protein.
       0.773
Swoo_1239
PFAM: MucB/RseB family protein; KEGG: sse:Ssed_1144 sigma E regulatory protein, MucB/RseB.
  
 
 0.544
Swoo_2779
TIGRFAM: anti-sigma factor, ChrR family; KEGG: slo:Shew_1477 anti-ECFsigma factor, ChrR.
  
 
 0.489
Swoo_0759
PFAM: peptidase M16 domain protein; KEGG: sse:Ssed_3824 peptidase M16 domain protein.
  
     0.456
Swoo_2357
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; KEGG: gtn:GTNG_0147 RNA polymerase ECF(extracytoplasmic function)-typesigma factor (sigma-W).
  
   
 0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.