STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3324KEGG: sse:Ssed_1331 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Swoo_3325
KEGG: sse:Ssed_1330 hypothetical protein.
  
    0.607
gshA
TIGRFAM: glutamate--cysteine ligase; KEGG: sse:Ssed_1329 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
       0.596
Swoo_2963
PFAM: protein of unknown function DUF1643; KEGG: ecs:ECs5248 hypothetical protein.
  
     0.501
Swoo_2401
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pde:Pden_0590 membrane protein involved in aromatic hydrocarbon degradation.
  
     0.483
Swoo_3323
KEGG: ppr:PBPRB1696 hypothetical protein.
       0.461
Swoo_1810
KEGG: sse:Ssed_2834 hypothetical protein.
  
     0.441
msrQ
Ferric reductase domain protein transmembrane component domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the r [...]
   
    0.437
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.