Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3363KEGG: vha:VIBHAR_05811 hypothetical protein. (83 aa)    
Predicted Functional Partners:
Swoo_3431
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: sse:Ssed_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.632
Swoo_3362
KEGG: sse:Ssed_3237 hypothetical protein.
       0.509
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.507
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
  
     0.503
Swoo_1361
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sse:Ssed_1260 YbaK/prolyl-tRNA synthetase associated region.
  
     0.445
Swoo_2391
KEGG: sse:Ssed_2233 hypothetical protein.
  
     0.436
Swoo_1432
KEGG: sse:Ssed_3194 hypothetical protein.
  
     0.435
Swoo_1045
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_0992 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.433
Swoo_1675
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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