Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3364PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sse:Ssed_1596 alcohol dehydrogenase, zinc-binding domain protein. (332 aa)    
Predicted Functional Partners:
Swoo_3365
PFAM: regulatory protein MarR; KEGG: slo:Shew_2562 transcriptional regulator, MarR family.
 
     0.590
Swoo_0649
TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sse:Ssed_4023 alcohol dehydrogenase, zinc-binding domain protein.
 
 
0.451
Swoo_3847
PFAM: ThiJ/PfpI domain protein; KEGG: ppu:PP_2491 ThiJ/PfpI family protein.
 
   0.442
argG
PFAM: argininosuccinate synthase; KEGG: sse:Ssed_4273 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
   0.439
Swoo_2967
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bat:BAS3184 alcohol dehydrogenase, zinc-containing.
 
 
0.439
Swoo_2399
PFAM: ThiJ/PfpI domain protein; KEGG: esa:ESA_02574 hypothetical protein.
 
   0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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