STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3365PFAM: regulatory protein MarR; KEGG: slo:Shew_2562 transcriptional regulator, MarR family. (161 aa)    
Predicted Functional Partners:
Swoo_1516
PFAM: OsmC family protein; KEGG: sse:Ssed_1386 OsmC family protein.
 
  
 0.807
Swoo_3364
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sse:Ssed_1596 alcohol dehydrogenase, zinc-binding domain protein.
 
     0.590
Swoo_3366
KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like.
       0.435
Swoo_3447
PFAM: glutathione peroxidase; KEGG: sse:Ssed_3298 glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
  
 0.426
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.