STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3367KEGG: vvy:VV2399 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Swoo_2929
KEGG: cps:CPS_3054 tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.729
Swoo_3368
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vvu:VV1_2016 lactoylglutathione lyase.
 
     0.655
Swoo_2930
PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_3053 putative oxidoreductase.
 
     0.650
Swoo_3366
KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like.
       0.523
Swoo_3369
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vvy:VV2401 hypothetical protein.
       0.509
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
   
    0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.