STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3369PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vvy:VV2401 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Swoo_3368
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vvu:VV1_2016 lactoylglutathione lyase.
  
    0.725
Swoo_2453
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sfr:Sfri_1406 antibiotic biosynthesis monooxygenase.
  
     0.613
Swoo_3367
KEGG: vvy:VV2399 hypothetical protein.
       0.509
Swoo_0549
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bmu:Bmul_4219 antibiotic biosynthesis monooxygenase.
  
     0.486
Swoo_3370
KEGG: spl:Spea_0781 conserved hypothetical protein.
       0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.