STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3373PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cps:CPS_3935 transcriptional regulator, GntR family. (484 aa)    
Predicted Functional Partners:
Swoo_3371
PFAM: Negative transcriptional regulator; KEGG: sfr:Sfri_0853 negative transcriptional regulator.
       0.601
Swoo_3372
PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_3936 acetyltransferase, GNAT family.
       0.575
Swoo_2693
PFAM: protein of unknown function DUF34; KEGG: sse:Ssed_1892 hypothetical protein.
   
    0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.