Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3375PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor. (824 aa)    
Predicted Functional Partners:
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.768
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
    0.755
Swoo_0130
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0151 hypothetical protein.
  
     0.705
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
 
  
 0.699
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.698
Swoo_4350
KEGG: sse:Ssed_0603 hypothetical protein.
  
    0.688
Swoo_2565
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2036 TonB-dependent receptor.
  
  
 0.684
Swoo_0726
KEGG: sse:Ssed_3834 hypothetical protein.
  
     0.671
Swoo_4926
KEGG: sse:Ssed_4507 hypothetical protein.
  
     0.653
Swoo_3068
PFAM: protein of unknown function DUF1260; KEGG: sse:Ssed_1582 protein of unknown function DUF1260.
  
     0.645
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.