STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3379PFAM: Propeptide PepSY amd peptidase M4; KEGG: sse:Ssed_3245 propeptide, PepSY amd peptidase M4. (111 aa)    
Predicted Functional Partners:
Swoo_3380
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3246 two component transcriptional regulator, winged helix family.
  
    0.684
Swoo_3381
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sse:Ssed_3247 sensor histidine kinase with ATPase domain.
       0.666
Swoo_1066
PFAM: conserved hypothetical protein; KEGG: spl:Spea_2251 conserved hypothetical protein.
  
    0.595
Swoo_4785
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_4394 hypothetical protein.
  
    0.595
Swoo_2045
KEGG: sse:Ssed_2621 hypothetical protein.
   
    0.538
Swoo_3382
KEGG: sse:Ssed_3248 hypothetical protein.
       0.464
Swoo_3378
KEGG: sse:Ssed_3244 hypothetical protein.
       0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.