STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3382KEGG: sse:Ssed_3248 hypothetical protein. (488 aa)    
Predicted Functional Partners:
Swoo_3381
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sse:Ssed_3247 sensor histidine kinase with ATPase domain.
 
     0.622
Swoo_3155
KEGG: spl:Spea_2732 hypothetical protein.
  
     0.537
Swoo_3380
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3246 two component transcriptional regulator, winged helix family.
       0.536
Swoo_1524
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sse:Ssed_1411 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
  
     0.522
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.497
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.473
Swoo_3629
Putative transcriptional regulator, CadC; KEGG: sfr:Sfri_0530 hypothetical protein.
  
     0.473
Swoo_3379
PFAM: Propeptide PepSY amd peptidase M4; KEGG: sse:Ssed_3245 propeptide, PepSY amd peptidase M4.
       0.464
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.453
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.