STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3396PFAM: peptidase domain protein; Endonuclease I; KEGG: slo:Shew_3021 endonuclease I. (539 aa)    
Predicted Functional Partners:
Swoo_1911
Endonuclease/exonuclease/phosphatase; PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_2170 endonuclease/exonuclease/phosphatase.
   
 0.482
Swoo_3886
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sse:Ssed_3944 endonuclease/exonuclease/phosphatase.
   
 0.468
Swoo_3397
KEGG: spl:Spea_2394 coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.423
Swoo_2666
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: stp:Strop_0039 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
     0.422
Swoo_2953
PFAM: PKD domain containing protein; peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase.
 
     0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.