STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3398PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3255 GCN5-related N-acetyltransferase. (166 aa)    
Predicted Functional Partners:
Swoo_3070
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1580 GCN5-related N-acetyltransferase.
 
   
 0.764
Swoo_4801
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_4413 GCN5-related N-acetyltransferase.
 
   
 0.723
Swoo_0586
KEGG: vfi:VFA0164 L-lysine 6-monooxygenase.
  
  
 0.479
Swoo_1497
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: sse:Ssed_1364 hypothetical protein.
  
     0.471
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.448
Swoo_4196
KEGG: sse:Ssed_0773 hypothetical protein.
   
    0.437
Swoo_3397
KEGG: spl:Spea_2394 coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.