STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3406PFAM: Amidohydrolase 3; KEGG: sse:Ssed_3258 amidohydrolase 3. (550 aa)    
Predicted Functional Partners:
Swoo_3252
N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_2691 amidohydrolase family protein.
 
     0.726
Swoo_0015
Amidohydrolase; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: sse:Ssed_0018 amidohydrolase.
 
     0.620
Swoo_4156
PFAM: FxsA cytoplasmic membrane protein; KEGG: sse:Ssed_4013 FxsA cytoplasmic membrane protein.
  
    0.555
Swoo_3407
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.531
Swoo_3741
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: slo:Shew_2992 amidohydrolase.
  
     0.507
Swoo_2368
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfr:Sfri_2093 amidohydrolase.
  
     0.506
Swoo_0393
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: spl:Spea_0284 peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.448
Swoo_1511
KEGG: slo:Shew_1243 peptidyl-Lys metalloendopeptidase.
  
     0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.