Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3423PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3272 major facilitator superfamily MFS_1. (392 aa)    
Predicted Functional Partners:
Swoo_3879
PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative.
  
     0.583
Swoo_2985
KEGG: sbm:Shew185_2760 hypothetical protein.
  
    0.484
deoD
TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: sse:Ssed_3271 purine nucleoside phosphorylase.
       0.478
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.475
napD
NapD family protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
     0.475
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.469
Swoo_2524
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: vch:VCA0112 hypothetical protein.
  
     0.463
Swoo_0252
PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_3367 methyl-accepting chemotaxis protein.
  
     0.457
Swoo_1767
KEGG: sse:Ssed_2881 hypothetical protein.
  
     0.457
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.453
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.