Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3433PFAM: regulatory protein TetR; KEGG: shn:Shewana3_2864 transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
Swoo_0435
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.648
Swoo_3434
PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_2730 glutathione S-transferase, C-terminal domain.
       0.569
Swoo_3435
PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRB0681 putative glutathione S-transferase; Belongs to the GST superfamily.
       0.443
Swoo_2971
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_1617 transcriptional regulator, AraC family.
  
     0.416
Swoo_0593
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sse:Ssed_4063 N-ethylmaleimide reductase, putative.
  
  
 0.404
Swoo_4055
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sse:Ssed_3644 putative NADH-dependent flavin oxidoreductase.
  
  
 0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.