Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3434PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_2730 glutathione S-transferase, C-terminal domain. (210 aa)    
Predicted Functional Partners:
Swoo_3435
PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRB0681 putative glutathione S-transferase; Belongs to the GST superfamily.
 
   
0.758
Swoo_0907
PFAM: Glutathione S-transferase domain; KEGG: sse:Ssed_3513 glutathione S-transferase, N-terminal domain; Belongs to the GST superfamily.
 
     0.660
Swoo_3433
PFAM: regulatory protein TetR; KEGG: shn:Shewana3_2864 transcriptional regulator, TetR family.
       0.569
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: spl:Spea_0757 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  0.529
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.519
Swoo_0127
PFAM: Glutathione S-transferase domain; KEGG: sse:Ssed_0148 glutathione S-transferase, N-terminal domain.
 
   
 0.504
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.474
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   0.464
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.444
Swoo_1930
PFAM: protein of unknown function DUF482; KEGG: spl:Spea_1865 protein of unknown function DUF482.
  
     0.429
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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