STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3451PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: sse:Ssed_3302 putative PAS/PAC sensor protein. (431 aa)    
Predicted Functional Partners:
Swoo_3452
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3303 two component transcriptional regulator, winged helix family.
 0.996
Swoo_2804
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: spl:Spea_1746 two component transcriptional regulator, winged helix family.
 
 0.822
Swoo_3962
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdn:Sden_0234 response regulator receiver.
 
 0.797
Swoo_3920
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pat:Patl_3411 two component transcriptional regulator, winged helix family.
 
 0.782
Swoo_2294
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2316 response regulator receiver protein.
 
 0.777
Swoo_1514
PFAM: response regulator receiver; KEGG: sse:Ssed_1383 response regulator containing a CheY-like protein receiver domain and a GGDEF domain-like protein.
 
 
 0.773
Swoo_3762
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0815 two component transcriptional regulator, winged helix family.
 
 0.753
Swoo_0150
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0168 two component transcriptional regulator, winged helix family.
 
 0.740
Swoo_1030
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0981 two component transcriptional regulator, winged helix family.
 
 0.734
Swoo_1038
PFAM: response regulator receiver; KEGG: sse:Ssed_0985 response regulator receiver protein.
 
 
   0.727
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.