Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3456PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sse:Ssed_3307 peptidase M61 domain protein. (601 aa)    
Predicted Functional Partners:
Swoo_4022
KEGG: sfr:Sfri_1847 hypothetical protein.
  
     0.643
Swoo_3457
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_3308 tetratricopeptide TPR_2 repeat protein.
       0.518
Swoo_3458
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_3309 diguanylate cyclase.
       0.513
Swoo_3459
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_3310 hypothetical protein.
       0.462
Swoo_0158
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_0178 peptidase M14, carboxypeptidase A.
  
     0.440
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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