STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3465PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_3317 peptidase S9, prolyl oligopeptidase active site domain protein. (943 aa)    
Predicted Functional Partners:
Swoo_4159
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.711
Swoo_3315
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.671
Swoo_3891
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.666
Swoo_3238
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sse:Ssed_1443 amidohydrolase.
  
     0.555
Swoo_3239
KEGG: sse:Ssed_1442 hypothetical protein.
  
     0.517
Swoo_4321
KEGG: sse:Ssed_0628 hypothetical protein.
  
     0.513
Swoo_1314
KEGG: sse:Ssed_1214 hypothetical protein.
  
     0.506
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.500
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.486
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.485
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.