Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rlmMConserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (358 aa)    
Predicted Functional Partners:
Swoo_3469
PFAM: protein of unknown function DUF423; KEGG: spl:Spea_2982 protein of unknown function DUF423.
  
  
 0.850
Swoo_3470
KEGG: sse:Ssed_3321 dienelactone hydrolase.
       0.647
Swoo_2785
PFAM: 37kDa nucleoid-associated protein; KEGG: sse:Ssed_1810 37 kDa nucleoid-associated protein.
  
    0.587
Swoo_3471
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3322 transcriptional regulator, LysR family.
       0.518
nfuA
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.503
Swoo_3467
Transposase; Programmed frameshift; KEGG: spl:Spea_3706 transposase.
       0.497
Swoo_2037
PFAM: protein of unknown function DUF177; KEGG: sse:Ssed_2629 protein of unknown function DUF177.
  
     0.431
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.409
Swoo_1543
KEGG: sse:Ssed_1431 hypothetical protein.
  
     0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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