STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3483PFAM: cobalamin synthesis protein P47K; KEGG: sse:Ssed_3334 cobalamin synthesis protein, P47K. (351 aa)    
Predicted Functional Partners:
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.780
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.731
Swoo_4333
PFAM: periplasmic solute binding protein; KEGG: sse:Ssed_0617 periplasmic solute binding protein.
  
  
 0.720
rpmB
PFAM: ribosomal protein L28; KEGG: sse:Ssed_0386 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.682
rpmG
PFAM: ribosomal protein L33; KEGG: sse:Ssed_0387 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.593
Swoo_3482
PFAM: multi antimicrobial extrusion protein MatE; KEGG: sse:Ssed_3333 multi antimicrobial extrusion protein MatE.
       0.563
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: sse:Ssed_2548 phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.
     
 0.549
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.548
Swoo_1785
KEGG: sse:Ssed_2860 transcriptional regulator, TraR/DksA family.
  
  
 0.510
Swoo_2439
Transcriptional regulator, TraR/DksA family; KEGG: scl:sce9023 putative DnaK suppressor protein.
  
  
 0.510
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.