Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_3484KEGG: sse:Ssed_3335 hypothetical protein. (464 aa)    
Predicted Functional Partners:
Swoo_0859
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.693
Swoo_4279
PFAM: aminotransferase class V; KEGG: spl:Spea_3648 aminotransferase class V.
    
   0.693
Swoo_1911
Endonuclease/exonuclease/phosphatase; PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_2170 endonuclease/exonuclease/phosphatase.
 
   
 0.500
Swoo_2981
PFAM: Colicin V production protein; KEGG: sse:Ssed_1655 colicin V production protein.
  
    0.452
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
 
  
 0.431
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
 
    0.429
Swoo_3485
KEGG: ppr:PBPRB1292 hypothetical protein.
       0.417
Swoo_3486
PFAM: RES domain protein; KEGG: psa:PST_2104 hypothetical protein.
       0.417
Swoo_3287
PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sse:Ssed_3167 PTS system, glucose-like IIB subunint.
     
 0.414
Swoo_3483
PFAM: cobalamin synthesis protein P47K; KEGG: sse:Ssed_3334 cobalamin synthesis protein, P47K.
       0.411
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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