STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3486PFAM: RES domain protein; KEGG: psa:PST_2104 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Swoo_3485
KEGG: ppr:PBPRB1292 hypothetical protein.
 
 
 0.990
Swoo_2461
PFAM: conserved hypothetical protein; KEGG: pst:PSPTO_1038 hypothetical protein.
 
 
 0.914
Swoo_1086
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.494
Swoo_3484
KEGG: sse:Ssed_3335 hypothetical protein.
       0.417
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.