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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3511Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_3341 putative signal transduction protein. (280 aa)    
Predicted Functional Partners:
Swoo_1624
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.724
Swoo_0011
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0013 putative signal transduction protein.
  
     0.702
Swoo_1594
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
     0.682
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
 
     0.664
Swoo_3294
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase.
  
     0.626
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.625
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
  
     0.592
Swoo_4825
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.592
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.587
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.574
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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