STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3515PFAM: Sterol-binding domain protein; KEGG: sse:Ssed_3349 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Swoo_3517
PFAM: peptidase U32; KEGG: sse:Ssed_3351 peptidase U32.
 
  
 0.964
Swoo_3516
PFAM: peptidase U32; KEGG: sse:Ssed_3350 peptidase U32.
 
  
 0.903
Swoo_0971
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sse:Ssed_0930 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ.
 
     0.564
Swoo_2636
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sse:Ssed_1952 two-component sensor NarX.
 
     0.508
Swoo_2628
KEGG: sse:Ssed_1962 hypothetical protein.
 
     0.504
Swoo_4471
PFAM: NosL family protein; KEGG: spl:Spea_0485 NosL family protein.
 
    0.491
Swoo_3514
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sse:Ssed_3346 response regulator/GGDEF domain protein.
       0.477
Swoo_4450
PFAM: NosL family protein; KEGG: spl:Spea_0509 NosL family protein.
 
    0.460
Swoo_3512
PFAM: peptidase U32; KEGG: sse:Ssed_3342 peptidase U32.
 
  
 0.458
Swoo_0949
PFAM: peptidase U32; KEGG: sse:Ssed_0847 peptidase U32.
 
  
 0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.