STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3520PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_3353 nucleoside recognition domain protein. (451 aa)    
Predicted Functional Partners:
Swoo_2742
Na+/H+ antiporter NhaC; PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: spl:Spea_2575 Na+/H+ antiporter NhaC.
 
     0.708
Swoo_1987
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_2643 nucleoside recognition domain protein.
  
  
 0.707
Swoo_3234
PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: sse:Ssed_1447 Na+/H+ antiporter NhaC.
  
     0.660
Swoo_3399
PFAM: chemotaxis sensory transducer; KEGG: spc:Sputcn32_2723 methyl-accepting chemotaxis sensory transducer.
 
      0.538
Swoo_3521
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; KEGG: sse:Ssed_3354 PAS/PAC sensor signal transduction histidine kinase.
       0.482
Swoo_0699
PFAM: Na+/H+ antiporter NhaC; KEGG: spl:Spea_3425 Na+/H+ antiporter NhaC.
  
     0.441
Swoo_0846
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: vfi:VF1089 immunogenic protein.
  
     0.431
Swoo_0847
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vfi:VF1090 transporter.
  
     0.423
Swoo_3255
PFAM: Na+/H+ antiporter NhaC; KEGG: sru:SRU_1137 Na+/H+ antiporter family.
  
     0.423
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.