Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3526TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sse:Ssed_3360 trimethylamine-N-oxide reductase TorA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)    
Predicted Functional Partners:
torD
Cytoplasmic chaperone TorD family protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
 
 0.998
Swoo_3525
TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sse:Ssed_3359 trimethylamine-N-oxide reductase C-type cytochrome TorC; Belongs to the TorC/TorY family.
 
 0.997
Swoo_3925
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rde:RD1_4233 formate dehydrogenase, beta subunit.
   
 
 0.813
Swoo_1861
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_2798 aspartate carbamoyltransferase.
 
 
 0.795
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
  
 
 0.794
Swoo_0234
TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_0230 anaerobic dimethyl sulfoxide reductase, B subunit.
 
 
 0.770
Swoo_3533
TIGRFAM: TMAO reductase system periplasmic protein TorT; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sse:Ssed_3366 TonB box domain protein.
  
  
 0.713
napD-2
NapD family protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
 
 0.698
Swoo_4452
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0507 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.696
Swoo_4473
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0483 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.695
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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