Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
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torDCytoplasmic chaperone TorD family protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily. (223 aa)    
Predicted Functional Partners:
Swoo_3526
TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sse:Ssed_3360 trimethylamine-N-oxide reductase TorA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.998
Swoo_3525
TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sse:Ssed_3359 trimethylamine-N-oxide reductase C-type cytochrome TorC; Belongs to the TorC/TorY family.
 
 
 0.995
Swoo_0233
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0229 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.867
Swoo_3533
TIGRFAM: TMAO reductase system periplasmic protein TorT; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sse:Ssed_3366 TonB box domain protein.
  
   
 0.740
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.717
Swoo_2013
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_1003 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.706
Swoo_3532
Multi-sensor hybrid histidine kinase; TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sse:Ssed_3365 multi-sensor hybrid histidine kinase.
  
   
 0.685
Swoo_0235
PFAM: cytoplasmic chaperone TorD family protein; KEGG: sse:Ssed_0231 cytoplasmic chaperone TorD family protein.
  
   
 0.674
Swoo_2678
TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: spl:Spea_2425 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family.
 
  
 0.575
Swoo_3524
TIGRFAM: trimethylamine N-oxide reductase system, TorE protein; PFAM: periplasmic nitrate reductase NapE; KEGG: slo:Shew_2796 periplasmic nitrate reductase NapE.
     
 0.571
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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