STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3542PFAM: putative esterase; KEGG: slo:Shew_1666 putative esterase. (412 aa)    
Predicted Functional Partners:
Swoo_4845
KEGG: sse:Ssed_4452 hypothetical protein.
  
     0.719
Swoo_0978
PFAM: isochorismatase hydrolase; KEGG: sse:Ssed_0932 isochorismatase hydrolase.
 
    0.636
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
       0.469
Swoo_2874
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sse:Ssed_1717 C4-dicarboxylate transporter/malic acid transport protein.
   
    0.440
Swoo_3038
KEGG: sse:Ssed_1617 hypothetical protein.
  
     0.412
Swoo_2658
PFAM: IucA/IucC family protein; KEGG: spe:Spro_0920 IucA/IucC family protein.
   
  
 0.410
Swoo_4500
PFAM: beta-lactamase; KEGG: pat:Patl_3770 beta-lactamase.
  
     0.407
Swoo_1190
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein.
  
    0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.