STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3575PFAM: conserved hypothetical protein; KEGG: cps:CPS_0478 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Swoo_0130
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0151 hypothetical protein.
  
     0.714
Swoo_1307
PFAM: SapC family protein; KEGG: sse:Ssed_1210 SapC family protein.
  
     0.527
Swoo_3838
PFAM: SapC family protein; KEGG: cps:CPS_0240 hypothetical protein.
  
     0.504
Swoo_3360
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.479
Swoo_1142
PFAM: SapC family protein; KEGG: sfr:Sfri_1311 SapC family protein.
  
     0.464
Swoo_2209
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2029 TonB-dependent receptor.
  
     0.461
Swoo_4650
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sse:Ssed_0283 signal transduction histidine kinase, nitrogen specific, NtrB.
   
    0.459
Swoo_3658
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.