STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3593PFAM: PKD domain containing protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: cps:CPS_1835 serine protease, trypsin family. (650 aa)    
Predicted Functional Partners:
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.800
Swoo_3592
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: btl:BALH_2688 transcriptional regulator, Cro/CI family.
       0.581
Swoo_3253
PFAM: peptidase M14 carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein.
  
 
 
 0.563
Swoo_3594
KEGG: cps:CPS_1836 putative lipoprotein.
       0.557
Swoo_1402
KEGG: bbr:BB4423 putative esterase.
  
 0.551
Swoo_3591
Hypothetical protein.
       0.549
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
 
 
 0.546
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
  
 
 0.537
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.502
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.494
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.