STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3596PFAM: 2-nitropropane dioxygenase NPD; KEGG: bha:BH1205 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Swoo_1877
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_2763 nitrite transporter.
  
 
 0.907
Swoo_2626
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1964 nitrate/nitrite transporter.
  
 
 0.907
Swoo_2635
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1953 nitrate/nitrite transporter.
  
 
 0.907
Swoo_2640
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1938 nitrate/nitrite transporter.
  
 
 0.907
Swoo_2631
KEGG: sse:Ssed_1957 nitrate reductase; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
    
  0.901
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
     
  0.900
Swoo_1417
PFAM: multicopper oxidase type 1; multicopper oxidase type 3; KEGG: net:Neut_1403 multicopper oxidase, type 3.
     
  0.900
Swoo_1860
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_2799 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
  0.900
Swoo_1875
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit.
     
  0.900
Swoo_1876
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sse:Ssed_2764 nitrite reductase (NAD(P)H), small subunit.
     
  0.900
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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