STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3603KEGG: sse:Ssed_3421 Xaa-His dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein. (497 aa)    
Predicted Functional Partners:
Swoo_3602
PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: sse:Ssed_3420 peptidase M17, leucyl aminopeptidase domain protein; Belongs to the peptidase M17 family.
  
 
 0.941
Swoo_3796
PepB aminopeptidase; Probably plays an important role in intracellular peptide degradation.
   
 
 0.930
gshB
Glutathione synthase; PFAM: protein of unknown function DUF201; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; KEGG: spl:Spea_3221 glutathione synthase; Belongs to the prokaryotic GSH synthase family.
     
 0.911
gshA
TIGRFAM: glutamate--cysteine ligase; KEGG: sse:Ssed_1329 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.911
gshB-2
KEGG: sse:Ssed_3973 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.
     
 0.911
Swoo_0962
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sse:Ssed_0913 aminopeptidase N.
     
 0.910
Swoo_2134
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sse:Ssed_2482 aminopeptidase N.
     
 0.910
Swoo_0999
KEGG: shn:Shewana3_3514 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
     
 0.909
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
 
 0.909
Swoo_1929
KEGG: sse:Ssed_2689 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
     
 0.909
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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