Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3609TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_3423 GGDEF domain-like protein. (328 aa)    
Predicted Functional Partners:
Swoo_2684
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: saz:Sama_0619 response regulator receiver protein.
 
 
 0.839
Swoo_2945
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sfr:Sfri_1418 diguanylate cyclase/phosphodiesterase.
 
 
 0.809
Swoo_3510
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_3340 diguanylate cyclase/phosphodiesterase.
  
   0.802
Swoo_2349
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: vvy:VVA0712 hypothetical protein.
  
    0.799
Swoo_0256
KEGG: sse:Ssed_0257 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
   0.796
Swoo_0618
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.796
Swoo_1051
Diguanylate phosphodiesterase; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: slo:Shew_0919 diguanylate phosphodiesterase.
  
    0.793
Swoo_2622
PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase.
  
    0.790
Swoo_0821
PFAM: EAL domain protein; KEGG: shm:Shewmr7_0931 EAL domain protein.
 
   
 0.782
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
  
    0.781
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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