STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glaAConserved hypothetical protein; Alpha-galactosidase that specifically removes branched alpha- 1,3-linked galactose residues present in blood group B antigens. Has no activity toward linear alpha-1,3-linked galactose residues (By similarity); Belongs to the glycosyl hydrolase 110 family. A subfamily. (608 aa)    
Predicted Functional Partners:
Swoo_3654
PFAM: sulfatase; KEGG: rba:RB6599 arylsulfatase A.
 
     0.920
Swoo_3657
PFAM: sulfatase; KEGG: rba:RB4017 probable sulfatase.
 
     0.910
Swoo_3655
PFAM: sulfatase; KEGG: sus:Acid_1241 sulfatase.
 
     0.894
Swoo_3660
PFAM: sulfatase; KEGG: pat:Patl_1842 sulfatase.
 
     0.791
Swoo_3659
PFAM: sulfatase; KEGG: bvu:BVU_1159 sulfatase.
 
     0.709
Swoo_3661
PFAM: sulfatase; KEGG: rba:RB1477 arylsulfatase.
  
     0.690
Swoo_3650
PFAM: sulfatase; KEGG: rba:RB6599 arylsulfatase A.
  
     0.652
Swoo_3651
PFAM: sulfatase; KEGG: ypi:YpsIP31758_1263 sulfatase.
  
     0.595
Swoo_3658
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
   
   0.540
Swoo_2408
PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
  
     0.526
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.