Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3719KEGG: sse:Ssed_3496 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Swoo_0909
KEGG: sse:Ssed_3511 hypothetical protein.
  
     0.699
Swoo_3718
KEGG: sse:Ssed_3495 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.608
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.515
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.484
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.439
Swoo_1533
PFAM: extracellular solute-binding protein family 1; KEGG: sse:Ssed_1420 extracellular solute-binding protein, family 1.
  
     0.434
Swoo_3990
KEGG: spl:Spea_3317 conserved hypothetical protein.
  
     0.433
Swoo_0870
KEGG: sse:Ssed_0867 acetyltransferase, GNAT family.
  
     0.431
Swoo_0867
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sse:Ssed_0863 protein of unknown function DUF306, MetA and HslJ.
  
     0.429
Swoo_0344
KEGG: spl:Spea_0242 conserved hypothetical protein.
  
     0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.