STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3729KEGG: sse:Ssed_3506 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Swoo_3727
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_3504 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.846
Swoo_3728
KEGG: sse:Ssed_3505 hypothetical protein.
       0.800
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.735
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
    0.733
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.698
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
  
    0.685
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.655
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
     0.605
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
  
     0.579
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.575
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.