Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3745PFAM: carbohydrate kinase FGGY; KEGG: tdn:Tmden_1477 carbohydrate kinase, FGGY. (525 aa)    
Predicted Functional Partners:
Swoo_3746
PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bcz:BCZK2699 conserved hypothetical protein; possible polyketide synthesis domain protein.
 
  
 0.896
Swoo_2192
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sse:Ssed_2414 phosphocarrier, HPr family.
    
 
 0.694
Swoo_3743
KEGG: tdn:Tmden_1970 short-chain dehydrogenase/reductase SDR.
 
   
 0.637
Swoo_3133
PFAM: Gluconate transporter; Citrate transporter; KEGG: sse:Ssed_2778 gluconate transporter.
 
  
 0.565
Swoo_3744
KEGG: rno:678915 hypothetical protein LOC678915.
       0.488
Swoo_4358
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0595 FAD dependent oxidoreductase.
 
  
 0.478
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.449
Swoo_0935
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase.
 
  
 0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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