Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3746PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bcz:BCZK2699 conserved hypothetical protein; possible polyketide synthesis domain protein. (124 aa)    
Predicted Functional Partners:
Swoo_3745
PFAM: carbohydrate kinase FGGY; KEGG: tdn:Tmden_1477 carbohydrate kinase, FGGY.
 
  
 0.896
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
     0.589
Swoo_4839
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sse:Ssed_4448 transcriptional regulator, histidine utilization repressor, GntR family.
  
    0.484
Swoo_3055
KEGG: sse:Ssed_1593 hypothetical protein.
  
     0.454
Swoo_3214
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amr:AM1_6231 glyoxalase family protein.
  
     0.454
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.452
Swoo_1711
PFAM: protein of unknown function DUF583; KEGG: sse:Ssed_2934 protein of unknown function DUF583.
  
     0.425
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
     0.410
Swoo_3743
KEGG: tdn:Tmden_1970 short-chain dehydrogenase/reductase SDR.
 
     0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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