Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3753KEGG: slo:Shew_2612 hypothetical protein. (344 aa)    
Predicted Functional Partners:
Swoo_3751
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: cps:CPS_1403 C4-dicarboxylate transporter family protein, DctQ subunit.
       0.658
Swoo_3752
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: maq:Maqu_3479 TRAP dicarboxylate transporter, DctM subunit.
       0.658
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.514
Swoo_1194
PFAM: conserved hypothetical protein; KEGG: spl:Spea_1005 conserved hypothetical protein.
  
     0.479
Swoo_1879
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sse:Ssed_2760 tetratricopeptide TPR_2 repeat protein.
  
     0.474
Swoo_1143
PFAM: tryptophan halogenase; KEGG: sbl:Sbal_1124 tryptophan halogenase.
   
    0.463
Swoo_3750
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.449
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
  
     0.418
Swoo_3729
KEGG: sse:Ssed_3506 hypothetical protein.
  
     0.412
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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