STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3754PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_3574 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Swoo_3755
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3576 carbonate dehydratase; Belongs to the LysR transcriptional regulatory family.
       0.550
Swoo_0805
KEGG: sse:Ssed_3777 hypothetical protein.
 
  
 0.513
Swoo_3635
Alkanal monooxygenase (FMN-linked); PFAM: luciferase family protein; KEGG: vfi:VFA0921 LuxA, luciferase alpha chain.
  
 
 0.459
Swoo_3636
Alkanal monooxygenase (FMN-linked); PFAM: luciferase family protein; KEGG: vfi:VFA0920 LuxB, luciferase beta chain.
  
 
 0.459
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
  
    0.456
Swoo_3435
PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRB0681 putative glutathione S-transferase; Belongs to the GST superfamily.
  
    0.450
Swoo_3914
PFAM: Glutathione S-transferase domain; KEGG: spl:Spea_3240 glutathione S-transferase domain.
  
    0.450
Swoo_4644
PFAM: NMT1/THI5 like domain protein; KEGG: sse:Ssed_0291 ABC-type nitrate/sulfonate/bicarbonate transport system protein.
  
  
 0.442
Swoo_3007
PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger CDGSH-type domain protein; KEGG: sse:Ssed_3552 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
 
   
 0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.